rpms/R-BufferedMatrixMethods/F-7 BufferedMatrixMethods-1.3.0-path.patch, NONE, 1.1 BufferedMatrixMethods-1.3.0-path.patch2, NONE, 1.1 R-BufferedMatrixMethods.spec, NONE, 1.1 .cvsignore, 1.1, 1.2 sources, 1.1, 1.2

[Pierre-YvesChibon (pingou)]

Author: pingou

Update of /cvs/pkgs/rpms/R-BufferedMatrixMethods/F-7
In directory cvs-int.fedora.redhat.com:/tmp/cvs-serv1780/F-7

Modified Files:
	.cvsignore sources 
Added Files:
	BufferedMatrixMethods-1.3.0-path.patch 
	BufferedMatrixMethods-1.3.0-path.patch2 
	R-BufferedMatrixMethods.spec 
Log Message:


BufferedMatrixMethods-1.3.0-path.patch:

--- NEW FILE BufferedMatrixMethods-1.3.0-path.patch ---
--- BufferedMatrixMethods/src/init_package.c.sav	2007-07-05 14:21:23.000000000 +0200
+++ BufferedMatrixMethods/src/init_package.c	2007-07-05 14:22:20.000000000 +0200
@@ -2,7 +2,7 @@
 
 
 /* This includes all the functions that we will need */
-#include "doubleBufferedMatrix_stubs.c"
+#include "/usr/share/R/library/BufferedMatrix/include/doubleBufferedMatrix_stubs.c"
 
 
 


--- NEW FILE BufferedMatrixMethods-1.3.0-path.patch2 ---
--- BufferedMatrixMethods/src/reprocess_bm.c_sav	2007-07-10 21:13:20.000000000 +0200
+++ BufferedMatrixMethods/src/preprocess_bm.c	2007-07-10 21:18:00.000000000 +0200
@@ -16,7 +16,7 @@
  *****************************************************/
 
 
-#include "doubleBufferedMatrix.h"
+#include "/usr/share/R/library/BufferedMatrix/include/doubleBufferedMatrix.h"
 
 
 #include <R.h>


--- NEW FILE R-BufferedMatrixMethods.spec ---
%define packname  BufferedMatrixMethods 

Name:             R-%{packname}
Version:          1.3.0
Release:          1%{?dist}
Summary:          Microarray Data related methods that utlize BufferedMatrix
Summary(fr):      Outils pour la manipulation des données de puces à ADN

Group:            Applications/Productivity 
License:          GPLv2+
URL:              http://bioconductor.org/packages/2.2/bioc/html/%{packname}.html
Source0:          http://bioconductor.org/packages/2.2/bioc/src/contrib/%{packname}_%{version}.tar.gz
Patch0:           %{packname}-%{version}-path.patch
Patch1:           %{packname}-%{version}-path.patch2
BuildRoot:        %{_tmppath}/%{name}-%{version}-%{release}-root-%(%{__id_u} -n)

Requires(post):   R
Requires(postun): R
Requires:         R-BufferedMatrix  
BuildRequires:    R-devel R-BufferedMatrix-devel tetex-latex 

%description
Microarray analysis methods that use BufferedMatrix objects

%description -l fr
Outils d'analyse de puce à ADN basé sur la manipulation des tables 
des bibliothèques BufferedMatrix

%prep
%setup -c -q -n %{packname}
%patch0 -p0
%patch1 -p0
%build

%install
rm -rf %{buildroot}

mkdir -p %{buildroot}%{_libdir}/R/library 
R CMD INSTALL %{packname} -l %{buildroot}%{_libdir}/R/library
# Clean up in advance of check
test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so)
rm -rf %{buildroot}%{_libdir}/R/library/R.css

%check
%{_bindir}/R CMD check %{packname}

%clean
rm -rf %{buildroot}

%post
%{_R_make_search_index}

%postun
%{_R_make_search_index}

%files
%defattr(-, root, root, -)
%dir %{_libdir}/R/library/%{packname}
%doc %{_libdir}/R/library/%{packname}/latex
%doc %{_libdir}/R/library/%{packname}/html
%doc %{_libdir}/R/library/%{packname}/DESCRIPTION
%doc %{_libdir}/R/library/%{packname}/man
%{_libdir}/R/library/%{packname}/CONTENTS
%{_libdir}/R/library/%{packname}/INDEX
%{_libdir}/R/library/%{packname}/libs
%{_libdir}/R/library/%{packname}/Meta
%{_libdir}/R/library/%{packname}/R
%{_libdir}/R/library/%{packname}/R-ex
%{_libdir}/R/library/%{packname}/help


%changelog
* Mon Oct 08 2007 Pingou <pingoufc4 at yahoo.fr> 1.3.0-1
- Update to bioconductor 2.1 

* Wed Aug 29 2007 Pingou <pingoufc4 at yahoo.fr> 1.0.0-5
- Change in the license tag
* Tue Jul 17 2007 Pingou <pingoufc4 at yahoo.fr> 1.0.0-4
- Add the Requires(post) and Requires(postun) sections
* Sun Jul 15 2007 Pingou <pingoufc4 at yahoo.fr> 1.0.0-3
- Add R-BufferedMatrixMethods-devel in the BR section
- Clean the files section
* Tue Jul 10 2007 Pingou <pingoufc4 at yahoo.fr> 1.0.0-2
- Add the requires section
* Tue Jul 10 2007 Pingou <pingoufc4 at yahoo.fr> 1.0.0-1 
- initial package for Fedora



Index: .cvsignore
===================================================================
RCS file: /cvs/pkgs/rpms/R-BufferedMatrixMethods/F-7/.cvsignore,v
retrieving revision 1.1
retrieving revision 1.2
diff -u -r1.1 -r1.2
--- .cvsignore	23 Nov 2007 19:54:45 -0000	1.1
+++ .cvsignore	26 Nov 2007 08:49:55 -0000	1.2
@@ -0,0 +1 @@
+BufferedMatrixMethods_1.3.0.tar.gz


Index: sources
===================================================================
RCS file: /cvs/pkgs/rpms/R-BufferedMatrixMethods/F-7/sources,v
retrieving revision 1.1
retrieving revision 1.2
diff -u -r1.1 -r1.2
--- sources	23 Nov 2007 19:54:45 -0000	1.1
+++ sources	26 Nov 2007 08:49:55 -0000	1.2
@@ -0,0 +1 @@
+75d61e55bf3d4c30b7e3aca7dbb39617  BufferedMatrixMethods_1.3.0.tar.gz