rpms/R-qvalue/devel R-qvalue.spec, NONE, 1.1 .cvsignore, 1.1, 1.2 sources, 1.1, 1.2

[Pierre-YvesChibon (pingou)]

Author: pingou

Update of /cvs/pkgs/rpms/R-qvalue/devel
In directory cvs-int.fedora.redhat.com:/tmp/cvs-serv14989/devel

Modified Files:
	.cvsignore sources 
Added Files:
	R-qvalue.spec 
Log Message:



--- NEW FILE R-qvalue.spec ---
%define packname  qvalue

Name:             R-%{packname}
Version:          1.12.0
Release:          2%{?dist}
Summary:          Q-value estimation for false discovery rate control 

Group:            Applications/Engineering 
License:          LGPLv2+
URL:              http://bioconductor.org/packages/2.1/bioc/html/qvalue.html
Source0:          http://bioconductor.org/packages/2.1/bioc/src/contrib/%{packname}_%{version}.tar.gz
BuildRoot:        %{_tmppath}/%{name}-%{version}-%{release}-root-%(%{__id_u} -n)
BuildArch:        noarch

Requires:         R
Requires(post):   R
Requires(postun): R
BuildRequires:    R-devel tetex-latex 

%description
It takes a list of p-values resulting from the simultaneous 
testing of many hypotheses and estimates their q-values. 
The q-value of a test measures the proportion of false positives 
incurred (called the false discovery rate) when that particular 
test is called significant. Various plots are automatically 
generated, allowing one to make sensible significance cut-offs. 
Several mathematical results have recently been shown on the 
conservative accuracy of the estimated q-values from this software. 
The software can be applied to problems in genomics, brain imaging, 
astrophysics, and data mining.

This package is a part of the Bioconductor (bioconductor.org) project.

%prep
%setup -q -c -n %{packname}

%build

%install
rm -rf %{buildroot}

sed -i -e 's/\r$//' %{packname}/inst/doc/qvalue.Rnw
sed -i -e 's/\r$//' %{packname}/inst/doc/qvalue.bib
sed -i -e 's/\r$//' %{packname}/inst/doc/qHist.eps
sed -i -e 's/\r$//' %{packname}/inst/doc/pHist.eps
sed -i -e 's/\r$//' %{packname}/inst/doc/qPlots.eps

mkdir -p %{buildroot}%{_datadir}/R/library 
R CMD INSTALL %{packname} -l %{buildroot}%{_datadir}/R/library
# Clean up in advance of check
test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so)
rm -rf %{buildroot}%{_datadir}/R/library/R.css

chmod -x %{buildroot}%{_datadir}/R/library/%{packname}/doc/*

%check
%{_bindir}/R CMD check %{packname}

%clean
rm -rf %{buildroot}

%post
%{_R_make_search_index}

%postun
%{_R_make_search_index}

%files
%defattr(-, root, root, -)
%dir %{_datadir}/R/library/%{packname}
%doc %{_datadir}/R/library/%{packname}/latex
%doc %{_datadir}/R/library/%{packname}/doc
%doc %{_datadir}/R/library/%{packname}/html
%doc %{_datadir}/R/library/%{packname}/DESCRIPTION
%doc %{_datadir}/R/library/%{packname}/man
%{_datadir}/R/library/%{packname}/CONTENTS
%{_datadir}/R/library/%{packname}/INDEX
%{_datadir}/R/library/%{packname}/Meta
%{_datadir}/R/library/%{packname}/R-ex
%{_datadir}/R/library/%{packname}/R
%{_datadir}/R/library/%{packname}/data
%{_datadir}/R/library/%{packname}/help


%changelog
* Tue Jan 08 2008 Pingou <pingoufc4 at yahoo.fr> 1.12.0-2
- Fix problem on the doc

* Sat Jan 05 2008 Pingou <pingoufc4 at yahoo.fr> 1.12.0-1
- Initial package for Fedora


Index: .cvsignore
===================================================================
RCS file: /cvs/pkgs/rpms/R-qvalue/devel/.cvsignore,v
retrieving revision 1.1
retrieving revision 1.2
diff -u -r1.1 -r1.2
--- .cvsignore	11 Jan 2008 21:53:43 -0000	1.1
+++ .cvsignore	12 Jan 2008 20:43:18 -0000	1.2
@@ -0,0 +1 @@
+qvalue_1.12.0.tar.gz


Index: sources
===================================================================
RCS file: /cvs/pkgs/rpms/R-qvalue/devel/sources,v
retrieving revision 1.1
retrieving revision 1.2
diff -u -r1.1 -r1.2
--- sources	11 Jan 2008 21:53:43 -0000	1.1
+++ sources	12 Jan 2008 20:43:18 -0000	1.2
@@ -0,0 +1 @@
+6afb4fb5568d66e822011a06671c46ab  qvalue_1.12.0.tar.gz