rpms/R-qvalue/F-8 R-qvalue.spec, NONE, 1.1 .cvsignore, 1.1, 1.2 sources, 1.1, 1.2
Pierre-YvesChibon (pingou)
fedora-extras-commits at redhat.com
Sat Jan 12 20:48:54 UTC 2008
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Author: pingou
Update of /cvs/pkgs/rpms/R-qvalue/F-8
In directory cvs-int.fedora.redhat.com:/tmp/cvs-serv15195/F-8
Modified Files:
.cvsignore sources
Added Files:
R-qvalue.spec
Log Message:
--- NEW FILE R-qvalue.spec ---
%define packname qvalue
Name: R-%{packname}
Version: 1.12.0
Release: 2%{?dist}
Summary: Q-value estimation for false discovery rate control
Group: Applications/Engineering
License: LGPLv2+
URL: http://bioconductor.org/packages/2.1/bioc/html/qvalue.html
Source0: http://bioconductor.org/packages/2.1/bioc/src/contrib/%{packname}_%{version}.tar.gz
BuildRoot: %{_tmppath}/%{name}-%{version}-%{release}-root-%(%{__id_u} -n)
BuildArch: noarch
Requires: R
Requires(post): R
Requires(postun): R
BuildRequires: R-devel tetex-latex
%description
It takes a list of p-values resulting from the simultaneous
testing of many hypotheses and estimates their q-values.
The q-value of a test measures the proportion of false positives
incurred (called the false discovery rate) when that particular
test is called significant. Various plots are automatically
generated, allowing one to make sensible significance cut-offs.
Several mathematical results have recently been shown on the
conservative accuracy of the estimated q-values from this software.
The software can be applied to problems in genomics, brain imaging,
astrophysics, and data mining.
This package is a part of the Bioconductor (bioconductor.org) project.
%prep
%setup -q -c -n %{packname}
%build
%install
rm -rf %{buildroot}
sed -i -e 's/\r$//' %{packname}/inst/doc/qvalue.Rnw
sed -i -e 's/\r$//' %{packname}/inst/doc/qvalue.bib
sed -i -e 's/\r$//' %{packname}/inst/doc/qHist.eps
sed -i -e 's/\r$//' %{packname}/inst/doc/pHist.eps
sed -i -e 's/\r$//' %{packname}/inst/doc/qPlots.eps
mkdir -p %{buildroot}%{_datadir}/R/library
R CMD INSTALL %{packname} -l %{buildroot}%{_datadir}/R/library
# Clean up in advance of check
test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so)
rm -rf %{buildroot}%{_datadir}/R/library/R.css
chmod -x %{buildroot}%{_datadir}/R/library/%{packname}/doc/*
%check
%{_bindir}/R CMD check %{packname}
%clean
rm -rf %{buildroot}
%post
%{_R_make_search_index}
%postun
%{_R_make_search_index}
%files
%defattr(-, root, root, -)
%dir %{_datadir}/R/library/%{packname}
%doc %{_datadir}/R/library/%{packname}/latex
%doc %{_datadir}/R/library/%{packname}/doc
%doc %{_datadir}/R/library/%{packname}/html
%doc %{_datadir}/R/library/%{packname}/DESCRIPTION
%doc %{_datadir}/R/library/%{packname}/man
%{_datadir}/R/library/%{packname}/CONTENTS
%{_datadir}/R/library/%{packname}/INDEX
%{_datadir}/R/library/%{packname}/Meta
%{_datadir}/R/library/%{packname}/R-ex
%{_datadir}/R/library/%{packname}/R
%{_datadir}/R/library/%{packname}/data
%{_datadir}/R/library/%{packname}/help
%changelog
* Tue Jan 08 2008 Pingou <pingoufc4 at yahoo.fr> 1.12.0-2
- Fix problem on the doc
* Sat Jan 05 2008 Pingou <pingoufc4 at yahoo.fr> 1.12.0-1
- Initial package for Fedora
Index: .cvsignore
===================================================================
RCS file: /cvs/pkgs/rpms/R-qvalue/F-8/.cvsignore,v
retrieving revision 1.1
retrieving revision 1.2
diff -u -r1.1 -r1.2
--- .cvsignore 11 Jan 2008 21:53:43 -0000 1.1
+++ .cvsignore 12 Jan 2008 20:48:19 -0000 1.2
@@ -0,0 +1 @@
+qvalue_1.12.0.tar.gz
Index: sources
===================================================================
RCS file: /cvs/pkgs/rpms/R-qvalue/F-8/sources,v
retrieving revision 1.1
retrieving revision 1.2
diff -u -r1.1 -r1.2
--- sources 11 Jan 2008 21:53:43 -0000 1.1
+++ sources 12 Jan 2008 20:48:19 -0000 1.2
@@ -0,0 +1 @@
+6afb4fb5568d66e822011a06671c46ab qvalue_1.12.0.tar.gz
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