rpms/glimmer/devel glimmer-chris.patch, NONE, 1.1 glimmer.spec, 1.2, 1.3

[Christian Iseli (c4chris)]

Author: c4chris

Update of /cvs/extras/rpms/glimmer/devel
In directory cvs-int.fedora.redhat.com:/tmp/cvs-serv26749

Modified Files:
	glimmer.spec 
Added Files:
	glimmer-chris.patch 
Log Message:
Add patch to port to gcc-4.3.

glimmer-chris.patch:

--- NEW FILE glimmer-chris.patch ---
diff -up glimmer3.02/src/Common/delcher.hh.chris glimmer3.02/src/Common/delcher.hh
--- glimmer3.02/src/Common/delcher.hh.chris	2006-06-12 21:40:14.000000000 +0200
+++ glimmer3.02/src/Common/delcher.hh	2008-01-15 22:54:53.000000000 +0100
@@ -30,7 +30,7 @@
 #include  <iomanip>
 #include  <fstream>
 #include  <vector>
-#include  <string>
+#include  <cstring>
 
 #include  "exceptions.hh"
 


Index: glimmer.spec
===================================================================
RCS file: /cvs/extras/rpms/glimmer/devel/glimmer.spec,v
retrieving revision 1.2
retrieving revision 1.3
diff -u -r1.2 -r1.3
--- glimmer.spec	22 Aug 2007 12:26:23 -0000	1.2
+++ glimmer.spec	15 Jan 2008 23:03:13 -0000	1.3
@@ -1,12 +1,13 @@
 Name:           glimmer
 Version:        3.02
-Release:        2%{?dist}
+Release:        3%{?dist}
 Summary:        System for finding genes in microbial DNA
 
 Group:          Applications/Engineering
 License:        Artistic clarified
 URL:            http://www.cbcb.umd.edu/software/glimmer
 Source0:        http://www.cbcb.umd.edu/software/glimmer/glimmer302.tar.gz
+Patch0:         glimmer-chris.patch
 BuildRoot:      %{_tmppath}/%{name}-%{version}-%{release}-root-%(%{__id_u} -n)
 Requires:       elph
 
@@ -19,6 +20,7 @@
 
 %prep
 %setup -q -n glimmer3.02
+%patch0 -p1 -b .chris
 rm -f sample-run/g3-*
 sed -i "s+/fs/szgenefinding/Glimmer3/bin+%{_libexecdir}/glimmer3+" scripts/g3-*
 sed -i "s+/fs/szgenefinding/Glimmer3/scripts+%{_datadir}/glimmer3+" scripts/g3-*
@@ -57,6 +59,9 @@
 
 
 %changelog
+* Tue Jan 16 2008 Christian Iseli <Christian.Iseli at licr.org> 3.02-3
+ - Add patch to port to gcc-4.3.
+
 * Wed Aug 22 2007 Christian Iseli <Christian.Iseli at licr.org> 3.02-2
  - Fix License tag.