FC5 breaks Accelrys InsightII - details

Jack Howarth howarth at bromo.msbb.uc.edu
Fri Apr 7 16:31:26 UTC 2006


Jakub,
   Thanks for the reply. I did an inventory of all the
executables and shared libraries in InsightII and 90%+
are fine with linkages to only __errno_location@@GLIBC_2.0.
Only three shared libraries...

libcblib.so
libdecipher_uif.so
libpgthread.so

and one executable, density, show symbols to errno. Interestingly
the shared libs show...

         U _errno@@GLIBC_2.0
         U errno@@GLIBC_2.0

...whereas the density binary shows...

086f5f1c B errno
086f5f1c V _errno
0805959c W __errno_location

The respective linkages are...

 ldd libcblib.so
        linux-gate.so.1 =>  (0x007c0000)
        libstdc++-libc6.2-2.so.3 => /usr/lib/libstdc++-libc6.2-2.so.3 (0x00c4c000)
        libm.so.6 => /lib/libm.so.6 (0x0045b000)
        libc.so.6 => /lib/libc.so.6 (0x00dca000)
        libgcc_s.so.1 => /lib/libgcc_s.so.1 (0x008fc000)
        /lib/ld-linux.so.2 (0x007c1000)

ldd libdecipher_uif.so
        linux-gate.so.1 =>  (0x007c0000)
        libstdc++-libc6.2-2.so.3 => /usr/lib/libstdc++-libc6.2-2.so.3 (0x003e6000)
        libm.so.6 => /lib/libm.so.6 (0x00e90000)
        libc.so.6 => /lib/libc.so.6 (0x005be000)
        libgcc_s.so.1 => /lib/libgcc_s.so.1 (0x00111000)
        /lib/ld-linux.so.2 (0x007c1000)

ldd libpgthread.so
/usr/bin/ldd: libpgthread.so: /usr/local/lib/ld-linux.so.2: bad ELF interpreter: No such file or directory

Interestingly for all the shared libs other than libpgthread.so, 'file *' shows...

ELF 32-bit LSB shared object, Intel 80386, version 1 (SYSV), not stripped

but libpgthread.so shows...

ELF 32-bit LSB shared object, Intel 80386, version 1 (SYSV), for GNU/Linux 2.0.0, not stripped

Should I take this to imply that the problem may be actually from the ancient libpgthread.so?
                     Jack




More information about the fedora-list mailing list