fc5 and gcc4.1 compiler problems

[Johannes Rainer]

of course, i pasted the output below. as i said already earlyer that's not
my source, and i am not a c++ developer at all... can me give someon a hint
where to look for the error (i suppose in the interfaces.cpp)...

g++ -I/usr/local/lib64/R/include -I/usr/local/lib64/R/include
-I/usr/local/include  -I/usr/include/boost -fpic  -g -O2 -c bbc.cpp -o bbc.o
g++ -I/usr/local/lib64/R/include -I/usr/local/lib64/R/include
-I/usr/local/include  -I/usr/include/boost -fpic  -g -O2 -c cliques.cpp -o
cliques.o
g++ -I/usr/local/lib64/R/include -I/usr/local/lib64/R/include
-I/usr/local/include  -I/usr/include/boost -fpic  -g -O2 -c hcs.cpp -o hcs.o
g++ -I/usr/local/lib64/R/include -I/usr/local/lib64/R/include
-I/usr/local/include  -I/usr/include/boost -fpic  -g -O2 -c incrConnComp.cpp-o
incrConnComp.o
g++ -I/usr/local/lib64/R/include -I/usr/local/lib64/R/include
-I/usr/local/include  -I/usr/include/boost -fpic  -g -O2 -c interfaces.cpp-o
interfaces.o
/usr/include/boost/graph/depth_first_search.hpp: In function 'void
boost::depth_first_search(const VertexListGraph&, const
boost::bgl_named_params<P, T, R>&) [with VertexListGraph =
std::vector<std::vector<long unsigned int, std::allocator<long unsigned int>
>, std::allocator<std::vector<long unsigned int, std::allocator<long
unsigned int> > > >, P =
boost::topo_sort_visitor<std::back_insert_iterator<std::vector<long unsigned
int, std::allocator<long unsigned int> > > >, T = boost::graph_visitor_t, R
= boost::bgl_named_params<boost::identity_property_map,
boost::vertex_index_t, boost::no_property>]':
/usr/include/boost/graph/topological_sort.hpp:64:   instantiated from 'void
boost::topological_sort(VertexListGraph&, OutputIterator, const
boost::bgl_named_params<P, T, R>&) [with VertexListGraph =
std::vector<std::vector<long unsigned int, std::allocator<long unsigned int>
>, std::allocator<std::vector<long unsigned int, std::allocator<long
unsigned int> > > >, OutputIterator =
std::back_insert_iterator<std::vector<long unsigned int, std::allocator<long
unsigned int> > >, P = boost::identity_property_map, T =
boost::vertex_index_t, R = boost::no_property]'
/usr/include/boost/graph/transitive_closure.hpp:120:   instantiated from
'void boost::transitive_closure(const Graph&, GraphTC&, G_to_TC_VertexMap,
VertexIndexMap) [with Graph = R_adjacency_list<boost::directedS, double>,
GraphTC = R_adjacency_list<boost::directedS, double>, G_to_TC_VertexMap =
boost::iterator_property_map<BGL_sequential_vertex_coloring::Vertex_Size_Type*,
boost::vec_adj_list_vertex_id_map<boost::property<boost::vertex_color_t,
boost::default_color_type, boost::no_property>, long unsigned int>, long
unsigned int, long unsigned int&>, VertexIndexMap =
boost::vec_adj_list_vertex_id_map<boost::property<boost::vertex_color_t,
boost::default_color_type, boost::no_property>, long unsigned int>]'
/usr/include/boost/graph/transitive_closure.hpp:263:   instantiated from
'void boost::transitive_closure(const Graph&, GraphTC&) [with Graph =
Graph_dd, GraphTC = Graph_dd]'
interfaces.cpp:371:   instantiated from here
/usr/include/boost/graph/depth_first_search.hpp:324: error: no matching
function for call to 'vertices(const std::vector<std::vector<long unsigned
int, std::allocator<long unsigned int> >, std::allocator<std::vector<long
unsigned int, std::allocator<long unsigned int> > > >&)'


On 5/12/06, Chris Jones <jonesc at hep.phy.cam.ac.uk> wrote:
>
> Johannes Rainer wrote:
> > no, i haven't tried that, but now i have ;) thanks to your suggestion,
> > but it didn't help. i get the same error. it must have to do with the
> > gcc4.1 compiler (or FC5), because on FC4 with the gcc4.0 the same
> > package compiles. actually i have also tried to compile it with the
> > g++32 instead of the g++, but this also failed.
> > any suggestions?
>
> Be careful. gcc and boost are VERY well debugged projects - As long as
> you are using the correct compatible versions, it is MUCH more likely
> the problem is in your code than in Boost or gcc. Its not impossible you
> have found a boost/gcc bug - Just very very unlikely.
>
> Could you post the output you get when you try and compile using the
> built in boost libraries/headers (with the gcc line as well).
>
> Chris
>
> >
> >
> > On 5/12/06, *Markku Kolkka* <markkuk at tuubi.net
> > <mailto:markkuk at tuubi.net>> wrote:
> >
> >     Johannes Rainer kirjoitti viestissään (lähetysaika perjantai, 12.
> >     toukokuuta 2006 09:34):
> >      > g++ -I/usr/local/lib64/R/include -I/usr/local/lib64/R/include
> >      > -I/usr/local/include  -IboostIncl  -fpic  -g -O2 -c
> >      > interfaces.cpp -o interfaces.o
> >      > boostIncl/boost/graph/depth_first_search.hpp: In function
> >      > 'void boost::depth_first_search(const VertexListGraph&, const
> >      > boost::bgl_named_params<P, T, R>&) [with VertexListGraph =
> >      > std::vector<std::vector<long unsigned int, std::allocator<long
> >      > unsigned int>
> >      > ...
> >
> >     I get the impression that your package uses its own copy of Boost
> >     headers instead of the FC5 ones. Have you tried installing
> >     boost-devel and configuring the software to
> >     use /usr/include/boost instead of "boostIncl"?
> >
> >     --
> >     Markku Kolkka
> >     markku.kolkka at iki.fi <mailto:markku.kolkka at iki.fi>
> >
> >     --
> >     fedora-list mailing list
> >     fedora-list at redhat.com <mailto:fedora-list at redhat.com>
> >     To unsubscribe: https://www.redhat.com/mailman/listinfo/fedora-list
> >
> >
> >
> >
> > --
> > Johannes Rainer, Msc
> > Tyrolean Cancer Research Institute
> > Innrain 66, 6020 Innsbruck, Austria
> > Tel.: +43 512 570485 15
> > Email: johannes.rainer at tcri.at <mailto:johannes.rainer at tcri.at>
> >           johannes.rainer at tugraz.at <mailto:johannes.rainer at tugraz.at>
> >
>
> --
> fedora-list mailing list
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>



-- 
Johannes Rainer, Msc
Tyrolean Cancer Research Institute
Innrain 66, 6020 Innsbruck, Austria
Tel.: +43 512 570485 15
Email: johannes.rainer at tcri.at
          johannes.rainer at tugraz.at
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