[Bug 447559] New: Review Request: perl-GO-TermFinder - Identify GO nodes that annotate a group of genes with a significant p-value
bugzilla at redhat.com
bugzilla at redhat.com
Tue May 20 14:49:47 UTC 2008
Please do not reply directly to this email. All additional
comments should be made in the comments box of this bug report.
https://bugzilla.redhat.com/show_bug.cgi?id=447559
Summary: Review Request: perl-GO-TermFinder - Identify GO nodes
that annotate a group of genes with a significant p-
value
Product: Fedora
Version: rawhide
Platform: All
OS/Version: Linux
Status: NEW
Severity: medium
Priority: medium
Component: Package Review
AssignedTo: nobody at fedoraproject.org
ReportedBy: kanarip at kanarip.com
QAContact: extras-qa at fedoraproject.org
CC: fedora-package-review at redhat.com,notting at redhat.com
Spec URL: http://pilot.genomicscenter.nl/genomics/SPECS/perl-GO-TermFinder.spec
SRPM URL: http://pilot.genomicscenter.nl/genomics/el5/SRPMS/perl-GO-TermFinder-0.82-1.el5.src.rpm
Description: This package is intended to provide a method whereby the P-values of a set
of GO annotations can be determined for a set of genes, based on the number
of genes that exist in the particular genome (or in a selected background
distribution from the genome), and their annotation, and the frequency with
which the GO nodes are annotated across the provided set of genes. The
P-value is simply calculated using the hypergeometric distribution as the
probability of x or more out of n genes having a given annotation, given
that G of N have that annotation in the genome in general. We chose the
hypergeometric distribution (sampling without replacement) since it is more
accurate, though slower to calculate, than the binomial distribution
(sampling with replacement).
Additional Information:
This is my first perl package ;-)
- Targeted for EL-5, F-8, F-9 and rawhide. See also koji scratch builds:
- http://koji.fedoraproject.org/koji/taskinfo?taskID=620022 (dist-f8-updates-candidate)
- http://koji.fedoraproject.org/koji/taskinfo?taskID=620032 (dist-f9-updates-candidate)
- http://koji.fedoraproject.org/koji/taskinfo?taskID=620080 (dist-f10)
--
Configure bugmail: https://bugzilla.redhat.com/userprefs.cgi?tab=email
------- You are receiving this mail because: -------
You are on the CC list for the bug, or are watching someone who is.
More information about the Fedora-package-review
mailing list