[Bug 462251] Review Request: pymol - python molecular graphics

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Tue Oct 21 19:40:57 UTC 2008


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https://bugzilla.redhat.com/show_bug.cgi?id=462251





--- Comment #40 from Adam Huffman <bloch at verdurin.com>  2008-10-21 15:40:56 EDT ---
Have now installed it on a Rawhide box.  Tried running some of the demos but
the demo files seem to be missing?:

ExecutiveProcessPDBFile-Error: Unable to open file
'/usr/lib64/python2.5/site-packages/pymol/pymol_path/data/demo/il2.pdb'.
Exception in thread Thread-2:
Traceback (most recent call last):
  File "/usr/lib64/python2.5/threading.py", line 486, in __bootstrap_inner
    self.run()
  File "/usr/lib64/python2.5/threading.py", line 446, in run
    self.__target(*self.__args, **self.__kwargs)
  File "/usr/lib64/python2.5/site-packages/pymol/wizard/demo.py", line 280, in
roving
    self.cmd.load("$PYMOL_DATA/demo/il2.pdb")
  File "/usr/lib64/python2.5/site-packages/pymol/importing.py", line 696, in
load
    if _self._raising(r,_self): raise pymol.CmdException
CmdException: <pymol.CmdException instance at 0x2c02dd0>

ExecutiveProcessPDBFile-Error: Unable to open file
'/usr/lib64/python2.5/site-packages/pymol/pymol_path/data/demo/il2.pdb'.
Exception in thread Thread-3:
Traceback (most recent call last):
  File "/usr/lib64/python2.5/threading.py", line 486, in __bootstrap_inner
    self.run()
  File "/usr/lib64/python2.5/threading.py", line 446, in run
    self.__target(*self.__args, **self.__kwargs)
  File "/usr/lib64/python2.5/site-packages/pymol/wizard/demo.py", line 280, in
roving
    self.cmd.load("$PYMOL_DATA/demo/il2.pdb")
  File "/usr/lib64/python2.5/site-packages/pymol/importing.py", line 696, in
load
    if _self._raising(r,_self): raise pymol.CmdException
CmdException: <pymol.CmdException instance at 0x26c1368>


[adam at vaio data]$ pwd
/usr/lib64/python2.5/site-packages/pymol/pymol_path/data
[adam at vaio data]$ ls
pymol

Is there a problem with the licensing of the demo files or do they just need to
be added?

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