[Bug 481508] New: Review Request: pipviewer - Visualizer for multiple alignments of genomic sequences

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Sun Jan 25 20:30:27 UTC 2009


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Summary: Review Request: pipviewer - Visualizer for multiple alignments of genomic sequences

https://bugzilla.redhat.com/show_bug.cgi?id=481508

           Summary: Review Request: pipviewer - Visualizer for multiple
                    alignments of genomic sequences
           Product: Fedora
           Version: rawhide
          Platform: All
        OS/Version: Linux
            Status: NEW
          Severity: medium
          Priority: medium
         Component: Package Review
        AssignedTo: nobody at fedoraproject.org
        ReportedBy: fabian at bernewireless.net
         QAContact: extras-qa at fedoraproject.org
                CC: notting at redhat.com, fedora-package-review at redhat.com
   Estimated Hours: 0.0
    Classification: Fedora


Spec URL: http://fab.fedorapeople.org/packages/SRPMS/pipviewer.spec
SRPM URL:
http://fab.fedorapeople.org/packages/SRPMS/pipviewer-0.3.9-1.fc10.src.rpm

Project URL: http://ygingras.net/bioinfo

Description:
Pipviewer is a visualizer for multiple alignements of genomic
sequences.  It highlights conserved regions and allows basic
anotations.  Its main goal is to find conserved probes for the
construction of gene order data sets.  Selected regions marked as
'probes' can be expoxted to fasta format.  It can also retreive gene
annotations form the NBCI and display this information along the
alignement.

Pipviewer is not an aligner.  You must compute the alignment with
another tool like Clustal or Multi PIP Maker.

Koji scratch build:
depends on vhybridize

rpmlint output:
[fab at laptop24 noarch]$ rpmlint pipviewer-0.3.9-1.fc10.noarch.rpm 
1 packages and 0 specfiles checked; 0 errors, 0 warnings.

[fab at laptop24 SRPMS]$ rpmlint pipviewer-0.3.9-1.fc10.src.rpm 
1 packages and 0 specfiles checked; 0 errors, 0 warnings.

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