[Bug 491490] New: Review Request: ghmm - A library with data structures and algorithms for Hidden Markov Models

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Summary: Review Request: ghmm - A library with data structures and algorithms for Hidden Markov Models

https://bugzilla.redhat.com/show_bug.cgi?id=491490

           Summary: Review Request: ghmm - A library with data structures
                    and algorithms for Hidden Markov Models
           Product: Fedora
           Version: rawhide
          Platform: All
        OS/Version: Linux
            Status: NEW
          Severity: medium
          Priority: medium
         Component: Package Review
        AssignedTo: nobody at fedoraproject.org
        ReportedBy: konrad at tylerc.org
         QAContact: extras-qa at fedoraproject.org
                CC: notting at redhat.com, fedora-package-review at redhat.com
   Estimated Hours: 0.0
    Classification: Fedora


Spec URL: http://konradm.fedorapeople.org/fedora/SPECS/ghmm.spec
SRPM URL:
http://konradm.fedorapeople.org/fedora/SRPMS/ghmm-0.7-1.svn2251.fc10.src.rpm
Description:
The General Hidden Markov Model library (GHMM) is a freely available
LGPL-ed C library implementing efficient data structures and algorithms
for basic and extended HMMs.

It is developed by the Algorithmics group at the Max Planck Institute
for Molecular Genetics.

Features:
  * Discrete and continuous emissions
  * Mixtures of PDFs for continuous emissions
  * Non-homogenous Markov chains
  * Pair HMMs (contributed by Genoscope)
  * Clustering and mixture modelling for HMMs
  * Graphical Editor HMMEd
  * Python bindings
  * XML-based file format



Note: This is a SAGE package
(https://fedoraproject.org/wiki/SIGs/SciTech/SAGE).

Rpmlint output:
ghmm.spec:72: W: rpm-buildroot-usage %prep -e 's|$(PYTHON) setup.py
install.*$|$(PYTHON) setup.py install -O1 --skip-build --root
${RPM_BUILD_ROOT}|' \
ghmm.src:72: W: rpm-buildroot-usage %prep -e 's|$(PYTHON) setup.py
install.*$|$(PYTHON) setup.py install -O1 --skip-build --root
${RPM_BUILD_ROOT}|' \

These are used so that when python libs are built/installed during the make
process, they use the correct flags. RPM_BUILD_ROOT is not defined here, it's
just reference when the makefile is run in %build/%install.

ghmm.x86_64: W: shared-lib-calls-exit /usr/lib64/libghmm.so.1.0.0
exit at GLIBC_2.2.5

Poor programming practice, not a packaging problem.

ghmm-devel.x86_64: W: no-documentation
ghmm-static.x86_64: W: no-documentation

Ignorable.

This builds in koji:
http://koji.fedoraproject.org/koji/taskinfo?taskID=1252576

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