From tcallawa at redhat.com Thu Nov 5 19:42:04 2009 From: tcallawa at redhat.com (Tom "spot" Callaway) Date: Thu, 05 Nov 2009 14:42:04 -0500 Subject: [Fedora-r-devel-list] R 2.10.0 updates Message-ID: <4AF32A8C.6010904@redhat.com> Sorry that this one didn't make it in time to be tagged for Fedora 12, but it will be available as a 0day update. Fedora 10: https://admin.fedoraproject.org/updates/rpy-1.0.3-13.fc10,R-2.10.0-1.fc10 Fedora 11: https://admin.fedoraproject.org/updates/rpy-2.0.6-7.fc11,R-2.10.0-1.fc11 Fedora 12: https://admin.fedoraproject.org/updates/rpy-2.0.6-7.fc12,R-2.10.0-1.fc12 EL-4: https://admin.fedoraproject.org/updates/R-2.10.0-1.el4 EL-5: https://admin.fedoraproject.org/updates/R-2.10.0-1.el5 Remember that EL-4 and EL-5 updates for R have to sit in updates-testing for 3 weeks, unless they receive 3 "positive" karma votes. If you use these packages and you want them to hit the updates repository sooner, please test them and give feedback at the above links. Thanks, ~spot From tcallawa at redhat.com Mon Nov 9 04:32:02 2009 From: tcallawa at redhat.com (Tom "spot" Callaway) Date: Mon, 09 Nov 2009 14:32:02 +1000 Subject: [Fedora-r-devel-list] R 2.10.0 updates In-Reply-To: <4AF32A8C.6010904@redhat.com> References: <4AF32A8C.6010904@redhat.com> Message-ID: <4AF79B42.1010403@redhat.com> On 11/06/2009 05:42 AM, Tom "spot" Callaway wrote: > Sorry that this one didn't make it in time to be tagged for Fedora 12, > but it will be available as a 0day update. Brown-paper bag fix available to resolve scriptlet noise. With 2.10.0, we no longer need to generate search index.txt from the modules "CONTENTS" files. We can also stop using the macro for the %post/%postun scriptlets in all R module packages, but for now, the script checks the version of R and only runs the index.txt generation bits if R < 2.10.0 (basically, a noop for everything we care about). We probably need to coordinate a rebuild of all R modules as part of this, so it might not be a bad time to drop the %_R_make_search_index scriptlet macro everywhere. Here's the links to the new update: Fedora 10: https://admin.fedoraproject.org/updates/R-2.10.0-2.fc10 Fedora 11: https://admin.fedoraproject.org/updates/R-2.10.0-2.fc11 Fedora 12: https://admin.fedoraproject.org/updates/R-2.10.0-2.fc12 EL-4: https://admin.fedoraproject.org/updates/R-2.10.0-2.el4 EL-5: https://admin.fedoraproject.org/updates/R-2.10.0-2.el5 Remember that EL-4 and EL-5 updates for R have to sit in updates-testing for 3 weeks, unless they receive 3 "positive" karma votes. If you use these packages and you want them to hit the updates repository sooner, please test them and give feedback at the above links. ~spot From pingou at pingoured.fr Thu Nov 19 21:43:28 2009 From: pingou at pingoured.fr (Pierre-Yves) Date: Thu, 19 Nov 2009 22:43:28 +0100 Subject: [Fedora-r-devel-list] R 2.10.0 updates In-Reply-To: <4AF79B42.1010403@redhat.com> References: <4AF32A8C.6010904@redhat.com> <4AF79B42.1010403@redhat.com> Message-ID: <1258667008.6413.1.camel@red.pingoured.fr> On Mon, 2009-11-09 at 14:32 +1000, Tom "spot" Callaway wrote: > We can also stop using the macro for the %post/%postun scriptlets in > all > R module packages, but for now, the script checks the version of R and > only runs the index.txt generation bits if R < 2.10.0 (basically, a > noop > for everything we care about). > > We probably need to coordinate a rebuild of all R modules as part of > this, so it might not be a bad time to drop the %_R_make_search_index > scriptlet macro everywhere. I am planning on rebuilding all my bioconductor package to their latest version this week-end (hopefully fixing all the FTBFS, they all do!). I will kick out the %post and %postun at the same time. Shall I also fix this in R2spec ? Thanks, Pierre From tcallawa at redhat.com Thu Nov 19 21:52:09 2009 From: tcallawa at redhat.com (Tom "spot" Callaway) Date: Thu, 19 Nov 2009 16:52:09 -0500 Subject: [Fedora-r-devel-list] R 2.10.0 updates In-Reply-To: <1258667008.6413.1.camel@red.pingoured.fr> References: <4AF32A8C.6010904@redhat.com> <4AF79B42.1010403@redhat.com> <1258667008.6413.1.camel@red.pingoured.fr> Message-ID: <4B05BE09.3000007@redhat.com> On 11/19/2009 04:43 PM, Pierre-Yves wrote: > On Mon, 2009-11-09 at 14:32 +1000, Tom "spot" Callaway wrote: >> We can also stop using the macro for the %post/%postun scriptlets in >> all >> R module packages, but for now, the script checks the version of R and >> only runs the index.txt generation bits if R < 2.10.0 (basically, a >> noop >> for everything we care about). >> >> We probably need to coordinate a rebuild of all R modules as part of >> this, so it might not be a bad time to drop the %_R_make_search_index >> scriptlet macro everywhere. > > I am planning on rebuilding all my bioconductor package to their latest > version this week-end (hopefully fixing all the FTBFS, they all do!). > I will kick out the %post and %postun at the same time. > > Shall I also fix this in R2spec ? Sounds like a plan. ~spot From jamatos at fc.up.pt Thu Nov 19 23:30:38 2009 From: jamatos at fc.up.pt (=?utf-8?q?Jos=C3=A9_Matos?=) Date: Thu, 19 Nov 2009 23:30:38 +0000 Subject: [Fedora-r-devel-list] R 2.10.0 updates In-Reply-To: <1258667008.6413.1.camel@red.pingoured.fr> References: <4AF32A8C.6010904@redhat.com> <4AF79B42.1010403@redhat.com> <1258667008.6413.1.camel@red.pingoured.fr> Message-ID: <200911192330.38773.jamatos@fc.up.pt> On Thursday 19 November 2009 21:43:28 Pierre-Yves wrote: > Shall I also fix this in R2spec ? FWIW you have my moral support. ;-) Think of it as your good deed of the day. :-) > Thanks, > > Pierre -- Jos? Ab?lio From ihok at hotmail.com Sat Nov 21 06:05:05 2009 From: ihok at hotmail.com (Jack Tanner) Date: Sat, 21 Nov 2009 01:05:05 -0500 Subject: [Fedora-r-devel-list] 2.10 weirdness? Message-ID: I'm trying to track down a bizarre R thing on 2.10-2; could someone try reproducing this (not necessarily under the same environment) and post if this works or not? library(ggplot2) # This works for me on CentOS w/ 2.10-2; there's a foo.png that has the plot png("foo.png", type="cairo") qplot(factor(cyl), data=mtcars, geom="bar") dev.off() # This doesn't produce foo.png foo <- function() { png("foo.png", type="cairo") qplot(factor(cyl), data=mtcars, geom="bar") dev.off() } foo() I'm stumped! _________________________________________________________________ Bing brings you maps, menus, and reviews organized in one place. http://www.bing.com/search?q=restaurants&form=MFESRP&publ=WLHMTAG&crea=TEXT_MFESRP_Local_MapsMenu_Resturants_1x1 -------------- next part -------------- An HTML attachment was scrubbed... URL: From pingou at pingoured.fr Sun Nov 22 13:05:52 2009 From: pingou at pingoured.fr (Pierre-Yves) Date: Sun, 22 Nov 2009 14:05:52 +0100 Subject: [Fedora-r-devel-list] R 2.10.0 updates In-Reply-To: <1258667008.6413.1.camel@red.pingoured.fr> References: <4AF32A8C.6010904@redhat.com> <4AF79B42.1010403@redhat.com> <1258667008.6413.1.camel@red.pingoured.fr> Message-ID: <1258895152.7430.4.camel@red.pingoured.fr> On Thu, 2009-11-19 at 22:43 +0100, Pierre-Yves wrote: > > I am planning on rebuilding all my bioconductor package to their > latest > version this week-end (hopefully fixing all the FTBFS, they all do!). > I will kick out the %post and %postun at the same time. As you might have seen on the rawhide report, the updates are done at the CVS level. 13 packages are built and wait to be pushed on testing the other will come in the coming 2 weeks I think. Also, the list of package in Fedora has been updated by Remi for the latest version of bioconductor: http://rpms.famillecollet.com/rpmphp/rpm.php?type=R He also created a page per package with some information (for example: http://rpms.famillecollet.com/rpmphp/zoom.php?rpm=R-abind ) Good week-end, Pierre